2D

3D

acceptor
acid
activity field
alpha
amide
area
atom name
atom specification

base
bin
bond order
build

CALCULATE
CALL
centres
CHECK
chiral
CLOSE
complementary centres , see centres
conformer
conjugated
connection
contact
CPK , see radius
CUSTOMISE

DELETE
DISPLAY
donor
double

ELSE , see IF
ELSEIF , see IF
ENDIF , see IF
END
exact
EXIT

field
FILE
filter
fit
functional groups , see keys

GOTO
group

histogram
HELP

IF
insertion code
interaction

Kekule
keys
KEY

LABEL
LEARN
LET
ligand
lipophile
LIST

mapping
MODIFY
molecule
molecule name

negative

OPEN
open

read , see open

output

panel
parameter
PFA
pharmacophore
PLOT
polar surface area
positive
PSA , see polar surface area

R-group
radius
ratio , see radius
READ
reject
residue
RETURN
ring
ROTATE

SAVE
save
score
SD
SDF , see SD
SEARCH
SELECT
sequence
serial
shape , see conformer
significance
similarity
site
site-points , see centres
SMILES
substructure
superimpose , see fit
surface area
SUGGEST

time
timeout , see time
tolerance
transforms
type

VdW , see radius
volume

WHILE
wildcard
write molecules , see SAVE
WRITE

XFA
XSA